CIPRES_THREADSPP=4
CIPRES_NP=6
running:
 raxmlHPC-HYBRID -T 4 -n result -s infile.txt -N 100 -p 12345 -m PROTGAMMADAYHOFF -x 12345
CIPRES_THREADSPP=4
CIPRES_NP=6
running:
 raxmlHPC-HYBRID -T 4 -n result -s infile.txt -N 100 -p 12345 -m PROTGAMMADAYHOFF -x 12345
CIPRES_THREADSPP=4
CIPRES_NP=6
running:
 raxmlHPC-HYBRID -T 4 -n result -s infile.txt -N 100 -p 12345 -m PROTGAMMADAYHOFF -x 12345
CIPRES_THREADSPP=4
CIPRES_NP=6
running:
 raxmlHPC-HYBRID -T 4 -n result -s infile.txt -N 100 -p 12345 -m PROTGAMMADAYHOFF -x 12345
CIPRES_THREADSPP=4
CIPRES_NP=6
running:
 raxmlHPC-HYBRID -T 4 -n result -s infile.txt -N 100 -p 12345 -m PROTGAMMADAYHOFF -x 12345
CIPRES_THREADSPP=4
CIPRES_NP=6
running:
 raxmlHPC-HYBRID -T 4 -n result -s infile.txt -N 100 -p 12345 -m PROTGAMMADAYHOFF -x 12345

This is RAxML MPI Process Number: 0

This is RAxML MPI Process Number: 1

This is RAxML MPI Process Number: 2

This is RAxML MPI Process Number: 3

This is RAxML MPI Process Number: 4

This is RAxML MPI Process Number: 5

This is the RAxML Master Pthread

This is RAxML Worker Pthread Number: 2

This is RAxML Worker Pthread Number: 1

This is RAxML Worker Pthread Number: 3

This is the RAxML Master Pthread

This is RAxML Worker Pthread Number: 2

This is RAxML Worker Pthread Number: 1

This is RAxML Worker Pthread Number: 3

This is the RAxML Master Pthread

This is the RAxML Master Pthread

This is RAxML Worker Pthread Number: 1

This is RAxML Worker Pthread Number: 1

This is RAxML Worker Pthread Number: 2

This is the RAxML Master Pthread

This is RAxML Worker Pthread Number: 2

This is RAxML Worker Pthread Number: 3

This is the RAxML Master Pthread

This is RAxML Worker Pthread Number: 3

This is RAxML Worker Pthread Number: 1
This is RAxML Worker Pthread Number: 1


This is RAxML Worker Pthread Number: 2

This is RAxML Worker Pthread Number: 2

This is RAxML Worker Pthread Number: 3

This is RAxML Worker Pthread Number: 3


This is RAxML version 8.2.12 released by Alexandros Stamatakis on May 2018.

With greatly appreciated code contributions by:
Andre Aberer      (HITS)
Simon Berger      (HITS)
Alexey Kozlov     (HITS)
Kassian Kobert    (HITS)
David Dao         (KIT and HITS)
Sarah Lutteropp   (KIT and HITS)
Nick Pattengale   (Sandia)
Wayne Pfeiffer    (SDSC)
Akifumi S. Tanabe (NRIFS)
Charlie Taylor    (UF)


Alignment has 991 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 75.82%

RAxML rapid bootstrapping algorithm

Using 1 distinct models/data partitions with joint branch length optimization



Executing 100 rapid bootstrap inferences

All free model parameters will be estimated by RAxML
GAMMA model of rate heterogeneity, ML estimate of alpha-parameter

GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Alignment Patterns: 991
Name: No Name Provided
DataType: AA
Substitution Matrix: DAYHOFF
Using fixed base frequencies




RAxML was called as follows:

raxmlHPC-HYBRID -T 4 -n result -s infile.txt -N 100 -p 12345 -m PROTGAMMADAYHOFF -x 12345 



Time for BS model parameter optimization on Process 3: 18.209935 seconds

Time for BS model parameter optimization on Process 1: 17.988397 seconds

Time for BS model parameter optimization on Process 5: 18.255565 seconds

Time for BS model parameter optimization on Process 2: 26.932150 seconds

Time for BS model parameter optimization on Process 0: 27.257350 seconds

Time for BS model parameter optimization on Process 4: 18.235674 seconds